WormBase Tree Display for CDS: PPA40124a
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PPA40124a | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons | 1 | 66 | |||
115 | 264 | |||||
337 | 460 | |||||
540 | 631 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S421-2.185 | ||
DB_remark | contains similarity to Pfam domain PF00010 (Helix-loop-helix DNA-binding domain); contains similarity to Interpro domains IPR015660 (), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Isoform | Curator_confirmed | WBPerson4055 | ||||
Visible | Gene | WBGene00278493 | ||||
Corresponding_transcript | PPA40124a.1 | |||||
Corresponding_protein | PP66469 | |||||
Corresponding_oligo_set | GPL14372_Probes_64571 | |||||
GPL14372_Probes_64572 | ||||||
Microarray_results | GPL14372_Probes_64571 | |||||
GPL14372_Probes_64572 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 18 Nov 2019 15:44:18 | WBPerson4055 | ||||
Method | curated |