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WormBase Tree Display for CDS: PPA40130

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Name Class

PPA40130SMapS_parentSequencePPA_ChrX
StructureSource_exons (15)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S429-0.40
DB_remarkcontains similarity to Pfam domains PF00094 (von Willebrand factor type D domain), PF01347 (Lipoprotein amino terminal region), PF09172 (Vitellinogen, open beta-sheet); contains similarity to Interpro domains IPR001747 (Vitellogenin, N-terminal), IPR001846 (von Willebrand factor, type D domain), IPR015255 (Vitellinogen, open beta-sheet), IPR015819 (Lipid transport protein, beta-sheet shell), IPR011030 (Lipovitellin-phosvitin complex, superhelical domain), IPR015816 (Vitellinogen, beta-sheet N-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00278499
Corresponding_transcriptPPA40130.1
Corresponding_proteinPP71094
Corresponding_oligo_setGPL14372_Probes_39130
GPL14372_Probes_44333
Matching_cDNA (18)
Microarray_resultsGPL14372_Probes_39130
GPL14372_Probes_44333
RNASeq_FPKMWBls:00000320.321659From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010.7597From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated