WormBase Tree Display for CDS: PPA40130
expand all nodes | collapse all nodes | view schema
PPA40130 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S429-0.40 | ||
DB_remark | contains similarity to Pfam domains PF00094 (von Willebrand factor type D domain), PF01347 (Lipoprotein amino terminal region), PF09172 (Vitellinogen, open beta-sheet); contains similarity to Interpro domains IPR001747 (Vitellogenin, N-terminal), IPR001846 (von Willebrand factor, type D domain), IPR015255 (Vitellinogen, open beta-sheet), IPR015819 (Lipid transport protein, beta-sheet shell), IPR011030 (Lipovitellin-phosvitin complex, superhelical domain), IPR015816 (Vitellinogen, beta-sheet N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00278499 | ||||
Corresponding_transcript | PPA40130.1 | |||||
Corresponding_protein | PP71094 | |||||
Corresponding_oligo_set | GPL14372_Probes_39130 | |||||
GPL14372_Probes_44333 | ||||||
Matching_cDNA (18) | ||||||
Microarray_results | GPL14372_Probes_39130 | |||||
GPL14372_Probes_44333 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.321659 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0.7597 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |