WormBase Tree Display for CDS: PPA40197
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PPA40197 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 33 | |||
202 | 282 | |||||
2590 | 2689 | |||||
3169 | 3224 | |||||
3277 | 3402 | |||||
3448 | 3526 | |||||
3573 | 3644 | |||||
3696 | 3835 | |||||
3884 | 3994 | |||||
6081 | 6110 | |||||
6680 | 6814 | |||||
6921 | 6965 | |||||
7035 | 7112 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S442-2.19 | ||
DB_remark | PPA-UNC-64 protein; contains similarity to Pfam domains PF00804 (Syntaxin), PF02935 (Cytochrome c oxidase subunit VIIc), PF05739 (SNARE domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR006011 (Syntaxin, N-terminal domain), IPR004202 (Cytochrome c oxidase subunit VIIc), IPR036636 (Cytochrome c oxidase subunit VIIc superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00278566 | ||||
Corresponding_transcript | PPA40197.1 | |||||
Corresponding_protein | PP71064 | |||||
Corresponding_oligo_set | GPL14372_Probes_42288 | |||||
GPL14372_Probes_42289 | ||||||
GPL14372_Probes_42290 | ||||||
GPL14372_Probes_42291 | ||||||
GPL14372_Probes_42292 | ||||||
Matching_cDNA | FG102402 | Inferred_automatically | transcript_builder.pl | |||
CO870629 | Inferred_automatically | transcript_builder.pl | ||||
CO871464 | Inferred_automatically | transcript_builder.pl | ||||
AW144962 | Inferred_automatically | transcript_builder.pl | ||||
BM320266 | Inferred_automatically | transcript_builder.pl | ||||
FG101893 | Inferred_automatically | transcript_builder.pl | ||||
FG098097 | Inferred_automatically | transcript_builder.pl | ||||
CO870503 | Inferred_automatically | transcript_builder.pl | ||||
FG101238 | Inferred_automatically | transcript_builder.pl | ||||
FG096900 | Inferred_automatically | transcript_builder.pl | ||||
FG096886 | Inferred_automatically | transcript_builder.pl | ||||
CO871245 | Inferred_automatically | transcript_builder.pl | ||||
FG097378 | Inferred_automatically | transcript_builder.pl | ||||
BM320637 | Inferred_automatically | transcript_builder.pl | ||||
FG098639 | Inferred_automatically | transcript_builder.pl | ||||
BM320231 | Inferred_automatically | transcript_builder.pl | ||||
BM320658 | Inferred_automatically | transcript_builder.pl | ||||
FG099848 | Inferred_automatically | transcript_builder.pl | ||||
CO871145 | Inferred_automatically | transcript_builder.pl | ||||
FG101554 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_42288 | |||||
GPL14372_Probes_42289 | ||||||
GPL14372_Probes_42290 | ||||||
GPL14372_Probes_42291 | ||||||
GPL14372_Probes_42292 | ||||||
RNASeq_FPKM | WBls:0000032 | 12.6233 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.72735 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |