WormBase Tree Display for CDS: PPA40233
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PPA40233 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 148 | |||
287 | 350 | |||||
470 | 532 | |||||
616 | 716 | |||||
763 | 824 | |||||
875 | 952 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S473-0.44 | ||
DB_remark | contains similarity to Pfam domain PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR002048 (EF-hand domain), IPR011992 (EF-hand domain pair) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00278602 | ||||
Corresponding_transcript | PPA40233.1 | |||||
Corresponding_protein | PP57049 | |||||
Corresponding_oligo_set | GPL14372_Probes_63430 | |||||
Microarray_results | GPL14372_Probes_63430 | |||||
RNASeq_FPKM | WBls:0000032 | 41.2193 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 73.0606 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |