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WormBase Tree Display for CDS: PPA40242

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Name Class

PPA40242SMapS_parentSequencePPA_ChrI
StructureSource_exons (27)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S473-1.90
DB_remarkPPA-SQV-6 protein; contains similarity to Pfam domains PF01822 (WSC domain), PF02485 (Core-2/I-Branching enzyme), PF07847 (PCO_ADO), PF12529 (Xylosyltransferase C terminal); contains similarity to Interpro domains IPR002889 (Carbohydrate-binding WSC), IPR024448 (Xylosyltransferase, C-terminal), IPR012864 (Cysteine oxygenase/2-aminoethanethiol dioxygenase), IPR003406 (Glycosyl transferase, family 14), IPR011051 (RmlC-like cupin domain superfamily), IPR014710 (RmlC-like jelly roll fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00278611
Corresponding_transcriptPPA40242.1
Corresponding_proteinPP53225
Corresponding_oligo_setGPL14372_Probes_63383
GPL14372_Probes_63384
GPL14372_Probes_63385
GPL14372_Probes_63386
GPL14372_Probes_63387
Matching_cDNAFG105139Inferred_automaticallytranscript_builder.pl
FG102747Inferred_automaticallytranscript_builder.pl
FG105556Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_63383
GPL14372_Probes_63384
GPL14372_Probes_63385
GPL14372_Probes_63386
GPL14372_Probes_63387
RNASeq_FPKMWBls:00000326.75105From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001016.64386From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated