WormBase Tree Display for CDS: PPA40242
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PPA40242 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (27) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S473-1.90 | ||
DB_remark | PPA-SQV-6 protein; contains similarity to Pfam domains PF01822 (WSC domain), PF02485 (Core-2/I-Branching enzyme), PF07847 (PCO_ADO), PF12529 (Xylosyltransferase C terminal); contains similarity to Interpro domains IPR002889 (Carbohydrate-binding WSC), IPR024448 (Xylosyltransferase, C-terminal), IPR012864 (Cysteine oxygenase/2-aminoethanethiol dioxygenase), IPR003406 (Glycosyl transferase, family 14), IPR011051 (RmlC-like cupin domain superfamily), IPR014710 (RmlC-like jelly roll fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00278611 | ||||
Corresponding_transcript | PPA40242.1 | |||||
Corresponding_protein | PP53225 | |||||
Corresponding_oligo_set | GPL14372_Probes_63383 | |||||
GPL14372_Probes_63384 | ||||||
GPL14372_Probes_63385 | ||||||
GPL14372_Probes_63386 | ||||||
GPL14372_Probes_63387 | ||||||
Matching_cDNA | FG105139 | Inferred_automatically | transcript_builder.pl | |||
FG102747 | Inferred_automatically | transcript_builder.pl | ||||
FG105556 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_63383 | |||||
GPL14372_Probes_63384 | ||||||
GPL14372_Probes_63385 | ||||||
GPL14372_Probes_63386 | ||||||
GPL14372_Probes_63387 | ||||||
RNASeq_FPKM | WBls:0000032 | 6.75105 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.64386 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |