WormBase Tree Display for CDS: PPA40274
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PPA40274 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 107 | |||
152 | 242 | |||||
285 | 407 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S498-0.73 | ||
DB_remark | PPA-OIG-2 protein; contains similarity to Pfam domain PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00278643 | ||||
Corresponding_transcript | PPA40274.1 | |||||
Corresponding_protein | PP22169 | |||||
Corresponding_oligo_set | GPL14372_Probes_84362 | |||||
GPL14372_Probes_84363 | ||||||
Matching_cDNA | EB183256 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_84362 | |||||
GPL14372_Probes_84363 | ||||||
RNASeq_FPKM | WBls:0000032 | 285.8 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 168.857 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |