WormBase Tree Display for CDS: PPA40577
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PPA40577 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 47 | |||
142 | 234 | |||||
326 | 415 | |||||
515 | 602 | |||||
650 | 706 | |||||
809 | 913 | |||||
1041 | 1262 | |||||
1354 | 1513 | |||||
1560 | 1609 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2838-28.58 | ||
DB_remark | contains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00278946 | ||||
Corresponding_transcript | PPA40577.1 | |||||
Corresponding_protein | PP64211 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |