WormBase Tree Display for CDS: PPA41436
expand all nodes | collapse all nodes | view schema
| PPA41436 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (81) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-59.26 | ||
| DB_remark | contains similarity to Pfam domains PF00059 (Lectin C-type domain), PF00092 (von Willebrand factor type A domain); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR016186 (C-type lectin-like/link domain superfamily), IPR001304 (C-type lectin-like), IPR002035 (von Willebrand factor, type A), IPR016187 (C-type lectin fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00279805 | ||||
| Corresponding_transcript | PPA41436.1 | |||||
| Corresponding_protein | PP71080 | |||||
| Corresponding_oligo_set | GPL14372_Probes_23434 | |||||
| GPL14372_Probes_23435 | ||||||
| GPL14372_Probes_76126 | ||||||
| GPL14372_Probes_76127 | ||||||
| GPL14372_Probes_76128 | ||||||
| GPL14372_Probes_76129 | ||||||
| GPL14372_Probes_76130 | ||||||
| GPL14372_Probes_76131 | ||||||
| GPL14372_Probes_76132 | ||||||
| Matching_cDNA | FE939820 | Inferred_automatically | transcript_builder.pl | |||
| EB182660 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_23434 | |||||
| GPL14372_Probes_23435 | ||||||
| GPL14372_Probes_76126 | ||||||
| GPL14372_Probes_76127 | ||||||
| GPL14372_Probes_76128 | ||||||
| GPL14372_Probes_76129 | ||||||
| GPL14372_Probes_76130 | ||||||
| GPL14372_Probes_76131 | ||||||
| GPL14372_Probes_76132 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.45452 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.572547 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
