WormBase Tree Display for CDS: PPA41877
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PPA41877 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 155 | |||
315 | 399 | |||||
548 | 610 | |||||
802 | 867 | |||||
1087 | 1143 | |||||
1531 | 1605 | |||||
2191 | 2316 | |||||
2731 | 2814 | |||||
3562 | 3624 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-5.45 | ||
DB_remark | PPA-CCNK-1 protein; contains similarity to Pfam domain PF00134 (Cyclin, N-terminal domain); contains similarity to Interpro domains IPR006671 (Cyclin, N-terminal), IPR013763 (Cyclin-like domain), IPR036915 (Cyclin-like superfamily), IPR043198 (Cyclin/Cyclin-like subunit Ssn8) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280246 | ||||
Corresponding_transcript | PPA41877.1 | |||||
Corresponding_protein | PP67146 | |||||
Corresponding_oligo_set | GPL14372_Probes_61257 | |||||
GPL14372_Probes_61258 | ||||||
GPL14372_Probes_61260 | ||||||
Microarray_results | GPL14372_Probes_61257 | |||||
GPL14372_Probes_61258 | ||||||
GPL14372_Probes_61260 | ||||||
RNASeq_FPKM | WBls:0000032 | 28.2606 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |