WormBase Tree Display for CDS: PPA41922
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PPA41922 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-11.56 | ||
DB_remark | PPA-MRP-7.3 protein; contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region); contains similarity to Interpro domains IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003439 (ABC transporter-like, ATP-binding domain), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR003593 (AAA+ ATPase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280291 | ||||
Corresponding_transcript | PPA41922.1 | |||||
Corresponding_protein | PP62196 | |||||
Corresponding_oligo_set | GPL14372_Probes_61135 | |||||
GPL14372_Probes_61136 | ||||||
Microarray_results | GPL14372_Probes_61135 | |||||
GPL14372_Probes_61136 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.50091 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |