WormBase Tree Display for CDS: PPA41927
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| PPA41927 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-0.11 | ||
| DB_remark | contains similarity to Pfam domains PF00620 (RhoGAP domain), PF01433 (Peptidase family M1 domain), PF17900 (Peptidase M1 N-terminal domain); contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase), IPR042097 (Aminopeptidase N-like , N-terminal domain superfamliy), IPR008936 (Rho GTPase activation protein), IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR000198 (Rho GTPase-activating protein domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00280296 | ||||
| Corresponding_transcript | PPA41927.1 | |||||
| Corresponding_protein | PP63198 | |||||
| Corresponding_oligo_set | GPL14372_Probes_14336 | |||||
| GPL14372_Probes_14339 | ||||||
| GPL14372_Probes_14340 | ||||||
| GPL14372_Probes_14342 | ||||||
| GPL14372_Probes_14343 | ||||||
| GPL14372_Probes_61114 | ||||||
| GPL14372_Probes_61117 | ||||||
| Microarray_results | GPL14372_Probes_14336 | |||||
| GPL14372_Probes_14339 | ||||||
| GPL14372_Probes_14340 | ||||||
| GPL14372_Probes_14342 | ||||||
| GPL14372_Probes_14343 | ||||||
| GPL14372_Probes_61114 | ||||||
| GPL14372_Probes_61117 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.81464 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
