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WormBase Tree Display for CDS: PPA41956

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Name Class

PPA41956SMapS_parentSequencePPA_ChrI
StructureSource_exons (30)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-4.44
DB_remarkcontains similarity to Pfam domains PF00026 (Eukaryotic aspartyl protease), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR001461 (Aspartic peptidase A1 family), IPR021109 (Aspartic peptidase domain superfamily), IPR033121 (Peptidase family A1 domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00280325
Corresponding_transcriptPPA41956.1
Corresponding_proteinPP72614
Corresponding_oligo_setGPL14372_Probes_2964
GPL14372_Probes_2965
GPL14372_Probes_2966
GPL14372_Probes_40395
Matching_cDNAFG098265Inferred_automaticallytranscript_builder.pl
FG095984Inferred_automaticallytranscript_builder.pl
FG101791Inferred_automaticallytranscript_builder.pl
AW097507Inferred_automaticallytranscript_builder.pl
FG101741Inferred_automaticallytranscript_builder.pl
FG094812Inferred_automaticallytranscript_builder.pl
AW052514Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_2964
GPL14372_Probes_2965
GPL14372_Probes_2966
GPL14372_Probes_40395
RNASeq_FPKMWBls:00000323.21619From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated