WormBase Tree Display for CDS: PPA41956
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PPA41956 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (30) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-4.44 | ||
DB_remark | contains similarity to Pfam domains PF00026 (Eukaryotic aspartyl protease), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR001461 (Aspartic peptidase A1 family), IPR021109 (Aspartic peptidase domain superfamily), IPR033121 (Peptidase family A1 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00280325 | ||||
Corresponding_transcript | PPA41956.1 | |||||
Corresponding_protein | PP72614 | |||||
Corresponding_oligo_set | GPL14372_Probes_2964 | |||||
GPL14372_Probes_2965 | ||||||
GPL14372_Probes_2966 | ||||||
GPL14372_Probes_40395 | ||||||
Matching_cDNA | FG098265 | Inferred_automatically | transcript_builder.pl | |||
FG095984 | Inferred_automatically | transcript_builder.pl | ||||
FG101791 | Inferred_automatically | transcript_builder.pl | ||||
AW097507 | Inferred_automatically | transcript_builder.pl | ||||
FG101741 | Inferred_automatically | transcript_builder.pl | ||||
FG094812 | Inferred_automatically | transcript_builder.pl | ||||
AW052514 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_2964 | |||||
GPL14372_Probes_2965 | ||||||
GPL14372_Probes_2966 | ||||||
GPL14372_Probes_40395 | ||||||
RNASeq_FPKM | WBls:0000032 | 3.21619 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |