WormBase Tree Display for CDS: PPA41975
expand all nodes | collapse all nodes | view schema
| PPA41975 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (45) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-7.21 | ||
| DB_remark | PPA-SEL-1 protein; contains similarity to Pfam domains PF00333 (Ribosomal protein S5, N-terminal domain), PF03719 (Ribosomal protein S5, C-terminal domain), PF08238 (Sel1 repeat); contains similarity to Interpro domains IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR006597 (Sel1-like repeat), IPR013810 (Small ribosomal subunit protein uS5, N-terminal), IPR005324 (Small ribosomal subunit protein uS5, C-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00280344 | ||||
| Corresponding_transcript | PPA41975.1 | |||||
| Corresponding_protein | PP72943 | |||||
| Corresponding_oligo_set | GPL14372_Probes_81117 | |||||
| GPL14372_Probes_81118 | ||||||
| GPL14372_Probes_81119 | ||||||
| GPL14372_Probes_81120 | ||||||
| GPL14372_Probes_81121 | ||||||
| GPL14372_Probes_81122 | ||||||
| GPL14372_Probes_81123 | ||||||
| Matching_cDNA | FG104103 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_81117 | |||||
| GPL14372_Probes_81118 | ||||||
| GPL14372_Probes_81119 | ||||||
| GPL14372_Probes_81120 | ||||||
| GPL14372_Probes_81121 | ||||||
| GPL14372_Probes_81122 | ||||||
| GPL14372_Probes_81123 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.900543 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
