WormBase Tree Display for CDS: PPA42047
expand all nodes | collapse all nodes | view schema
PPA42047 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 142 | |||
225 | 475 | |||||
557 | 724 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-21.10 | ||
DB_remark | contains similarity to Pfam domains PF00438 (S-adenosylmethionine synthetase, N-terminal domain), PF02773 (S-adenosylmethionine synthetase, C-terminal domain); contains similarity to Interpro domains IPR022630 (S-adenosylmethionine synthetase, C-terminal), IPR022636 (S-adenosylmethionine synthetase superfamily), IPR022628 (S-adenosylmethionine synthetase, N-terminal), IPR002133 (S-adenosylmethionine synthetase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00280416 | ||||
Corresponding_transcript | PPA42047.1 | |||||
Corresponding_protein | PP57018 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |