WormBase Tree Display for CDS: PPA42085
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PPA42085 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 123 | |||
169 | 222 | |||||
494 | 543 | |||||
554 | 578 | |||||
744 | 857 | |||||
1157 | 1264 | |||||
1473 | 1625 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-26.69 | ||
DB_remark | contains similarity to Pfam domain PF00177 (Ribosomal protein S7p/S5e); contains similarity to Interpro domains IPR023798 (Small ribosomal subunit protein uS7 domain), IPR000235 (Small ribosomal subunit protein uS7), IPR036823 (Small ribosomal subunit protein uS7 domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00280454 | ||||
Corresponding_transcript | PPA42085.1 | |||||
Corresponding_protein | PP68243 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |