WormBase Tree Display for CDS: PPA42087
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PPA42087 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 1522 | |||
2036 | 2205 | |||||
2407 | 2670 | |||||
4626 | 5069 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-27.57 | ||
DB_remark | contains similarity to Pfam domains PF14529 (Endonuclease-reverse transcriptase), PF17921 (Integrase zinc binding domain); contains similarity to Interpro domains IPR005135 (Endonuclease/exonuclease/phosphatase), IPR041588 (Integrase zinc-binding domain), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280456 | ||||
Corresponding_transcript | PPA42087.1 | |||||
Corresponding_protein | PP70580 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |