WormBase Tree Display for CDS: PPA42114
expand all nodes | collapse all nodes | view schema
PPA42114 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-31.24 | ||
DB_remark | contains similarity to Pfam domain PF07818 (HCNGP-like protein); contains similarity to Interpro domains IPR012479 (SAP30-binding protein), IPR020103 (Pseudouridine synthase, catalytic domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00280483 | ||||
Corresponding_transcript | PPA42114.1 | |||||
Corresponding_protein | PP73689 | |||||
Corresponding_oligo_set | GPL14372_Probes_69322 | |||||
Matching_cDNA | FG105308 | Inferred_automatically | transcript_builder.pl | |||
EB184315 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_69322 | |||||
RNASeq_FPKM | WBls:0000032 | 33.147 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.90829 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |