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WormBase Tree Display for CDS: PPA42114

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Name Class

PPA42114SMapS_parentSequencePPA_ChrI
StructureSource_exons (19)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-31.24
DB_remarkcontains similarity to Pfam domain PF07818 (HCNGP-like protein); contains similarity to Interpro domains IPR012479 (SAP30-binding protein), IPR020103 (Pseudouridine synthase, catalytic domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
Start_not_found1
VisibleGeneWBGene00280483
Corresponding_transcriptPPA42114.1
Corresponding_proteinPP73689
Corresponding_oligo_setGPL14372_Probes_69322
Matching_cDNAFG105308Inferred_automaticallytranscript_builder.pl
EB184315Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_69322
RNASeq_FPKMWBls:000003233.147From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001016.90829From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated