WormBase Tree Display for CDS: PPA42124
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| PPA42124 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (16) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-34.36 | ||
| DB_remark | PPA-ODC-1.3 protein; contains similarity to Pfam domains PF00278 (Pyridoxal-dependent decarboxylase, C-terminal sheet domain), PF02784 (Pyridoxal-dependent decarboxylase, pyridoxal binding domain); contains similarity to Interpro domains IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR002433 (Ornithine decarboxylase), IPR009006 (Alanine racemase/group IV decarboxylase, C-terminal), IPR022644 (Orn/DAP/Arg decarboxylase 2, N-terminal), IPR022643 (Orn/DAP/Arg decarboxylase 2, C-terminal), IPR029066 (PLP-binding barrel) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00280493 | ||||
| Corresponding_transcript | PPA42124.1 | |||||
| Corresponding_protein | PP56327 | |||||
| Corresponding_oligo_set | GPL14372_Probes_90947 | |||||
| GPL14372_Probes_90948 | ||||||
| GPL14372_Probes_90952 | ||||||
| GPL14372_Probes_90953 | ||||||
| Matching_cDNA | FE935756 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_90947 | |||||
| GPL14372_Probes_90948 | ||||||
| GPL14372_Probes_90952 | ||||||
| GPL14372_Probes_90953 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.59938 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.71602 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
