WormBase Tree Display for CDS: PPA42140
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| PPA42140 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (17) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-37.48 | ||
| DB_remark | contains similarity to Pfam domains PF00248 (Aldo/keto reductase family), PF00635 (MSP (Major sperm protein) domain); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR008962 (PapD-like superfamily), IPR036812 (NADP-dependent oxidoreductase domain superfamily), IPR020471 (Aldo-keto reductase), IPR013783 (Immunoglobulin-like fold), IPR023210 (NADP-dependent oxidoreductase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00280509 | ||||
| Corresponding_transcript | PPA42140.1 | |||||
| Corresponding_protein | PP59614 | |||||
| Corresponding_oligo_set | GPL14372_Probes_33316 | |||||
| GPL14372_Probes_33317 | ||||||
| Matching_cDNA | CN442794 | Inferred_automatically | transcript_builder.pl | |||
| AA116143 | Inferred_automatically | transcript_builder.pl | ||||
| CN442645 | Inferred_automatically | transcript_builder.pl | ||||
| FG095301 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_33316 | |||||
| GPL14372_Probes_33317 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.36916 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 28.3806 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
