WormBase Tree Display for CDS: PPA42149
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| PPA42149 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-39.24 | ||
| DB_remark | PPA-TIR-1.3 protein; contains similarity to Pfam domains PF00250 (Forkhead domain), PF02874 (ATP synthase alpha/beta family, beta-barrel domain), PF13676 (TIR domain); contains similarity to Interpro domains IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR004100 (ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR039184 (Sterile alpha and TIR motif-containing protein 1), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR035897 (Toll/interleukin-1 receptor homology (TIR) domain superfamily), IPR001766 (Fork head domain), IPR036121 (ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00280518 | ||||
| Corresponding_transcript | PPA42149.1 | |||||
| Corresponding_protein | PP56450 | |||||
| Corresponding_oligo_set | GPL14372_Probes_91047 | |||||
| Microarray_results | GPL14372_Probes_91047 | |||||
| RNASeq_FPKM | WBls:0000032 | 2.2947 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 11.7427 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
