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WormBase Tree Display for CDS: PPA42186

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Name Class

PPA42186SMapS_parentSequencePPA_ChrI
StructureSource_exons (14)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-46.12
DB_remarkcontains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00280555
Corresponding_transcriptPPA42186.1
Corresponding_proteinPP60758
Corresponding_oligo_setGPL14372_Probes_45646
GPL14372_Probes_57154
GPL14372_Probes_57155
GPL14372_Probes_57156
GPL14372_Probes_76579
GPL14372_Probes_91312
GPL14372_Probes_91313
Microarray_resultsGPL14372_Probes_45646
GPL14372_Probes_57154
GPL14372_Probes_57155
GPL14372_Probes_57156
GPL14372_Probes_76579
GPL14372_Probes_91312
GPL14372_Probes_91313
RNASeq_FPKMWBls:000003220.8724From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010141.0884From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated