WormBase Tree Display for CDS: PPA42186
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PPA42186 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-46.12 | ||
DB_remark | contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280555 | ||||
Corresponding_transcript | PPA42186.1 | |||||
Corresponding_protein | PP60758 | |||||
Corresponding_oligo_set | GPL14372_Probes_45646 | |||||
GPL14372_Probes_57154 | ||||||
GPL14372_Probes_57155 | ||||||
GPL14372_Probes_57156 | ||||||
GPL14372_Probes_76579 | ||||||
GPL14372_Probes_91312 | ||||||
GPL14372_Probes_91313 | ||||||
Microarray_results | GPL14372_Probes_45646 | |||||
GPL14372_Probes_57154 | ||||||
GPL14372_Probes_57155 | ||||||
GPL14372_Probes_57156 | ||||||
GPL14372_Probes_76579 | ||||||
GPL14372_Probes_91312 | ||||||
GPL14372_Probes_91313 | ||||||
RNASeq_FPKM | WBls:0000032 | 20.8724 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 41.0884 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |