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WormBase Tree Display for CDS: PPA42213

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Name Class

PPA42213SMapS_parentSequencePPA_ChrI
StructureSource_exons (29)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-49.32
DB_remarkcontains similarity to Pfam domains PF00501 (AMP-binding enzyme), PF08718 (Glycolipid transfer protein (GLTP)), PF13193 (AMP-binding enzyme C-terminal domain); contains similarity to Interpro domains IPR025110 (AMP-binding enzyme, C-terminal domain), IPR014830 (Glycolipid transfer protein domain), IPR000873 (AMP-dependent synthetase/ligase domain), IPR042099 (ANL, N-terminal domain), IPR036497 (Glycolipid transfer protein superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00280582
Corresponding_transcriptPPA42213.1
Corresponding_proteinPP53496
Corresponding_oligo_setGPL14372_Probes_57914
GPL14372_Probes_57915
GPL14372_Probes_57917
GPL14372_Probes_57920
GPL14372_Probes_91389
Microarray_resultsGPL14372_Probes_57914
GPL14372_Probes_57915
GPL14372_Probes_57917
GPL14372_Probes_57920
GPL14372_Probes_91389
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated