WormBase Tree Display for CDS: PPA42219
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PPA42219 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-51.27 | ||
DB_remark | PPA-SMK-1.1 protein; contains similarity to Pfam domain PF04802 (Phosphatase 4 regulatory subunit 3); contains similarity to Interpro domains IPR006887 (Serine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domain), IPR011993 (PH-like domain superfamily), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00280588 | ||||
Corresponding_transcript | PPA42219.1 | |||||
Corresponding_protein | PP72825 | |||||
Corresponding_oligo_set | GPL14372_Probes_33643 | |||||
GPL14372_Probes_33645 | ||||||
GPL14372_Probes_33646 | ||||||
Microarray_results | GPL14372_Probes_33643 | |||||
GPL14372_Probes_33645 | ||||||
GPL14372_Probes_33646 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |