WormBase Tree Display for CDS: PPA42220
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PPA42220 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 100 | |||
2570 | 2672 | |||||
2949 | 3015 | |||||
3171 | 3230 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-51.28 | ||
DB_remark | contains similarity to Pfam domain PF04155 (Ground-like domain); contains similarity to Interpro domain IPR007284 (Ground-like domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00280589 | ||||
Corresponding_transcript | PPA42220.1 | |||||
Corresponding_protein | PP63657 | |||||
Corresponding_oligo_set | GPL14372_Probes_91424 | |||||
GPL14372_Probes_91426 | ||||||
GPL14372_Probes_91427 | ||||||
Matching_cDNA | FG101332 | Inferred_automatically | transcript_builder.pl | |||
FE933720 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_91424 | |||||
GPL14372_Probes_91426 | ||||||
GPL14372_Probes_91427 | ||||||
RNASeq_FPKM | WBls:0000032 | 185.393 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 54.7641 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |