WormBase Tree Display for CDS: PPA42245
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PPA42245 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 685 | |||
754 | 986 | |||||
1681 | 1746 | |||||
1789 | 1939 | |||||
1982 | 2147 | |||||
2203 | 2288 | |||||
2401 | 2826 | |||||
6632 | 7357 | |||||
7961 | 8037 | |||||
8378 | 8413 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-53.33 | ||
DB_remark | contains similarity to Pfam domains PF10545 (Alcohol dehydrogenase transcription factor Myb/SANT-like), PF14529 (Endonuclease-reverse transcriptase); contains similarity to Interpro domains IPR005135 (Endonuclease/exonuclease/phosphatase), IPR006578 (MADF domain), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280614 | ||||
Corresponding_transcript | PPA42245.1 | |||||
Corresponding_protein | PP55344 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |