WormBase Tree Display for CDS: PPA42504
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PPA42504 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 483 | |||
507 | 1179 | |||||
1504 | 1697 | |||||
1935 | 2724 | |||||
2812 | 3193 | |||||
3779 | 4190 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2847-1.16 | ||
DB_remark | contains similarity to Pfam domains PF05380 (Pao retrotransposon peptidase), PF13650 (Aspartyl protease), PF17921 (Integrase zinc binding domain), PF18701 (Family of unknown function (DUF5641)); contains similarity to Interpro domains IPR021109 (Aspartic peptidase domain superfamily), IPR040676 (Domain of unknown function DUF5641), IPR008042 (Retrotransposon, Pao), IPR041588 (Integrase zinc-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280873 | ||||
Corresponding_transcript | PPA42504.1 | |||||
Corresponding_protein | PP63958 | |||||
Corresponding_oligo_set | GPL14372_Probes_34264 | |||||
Microarray_results | GPL14372_Probes_34264 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |