WormBase Tree Display for CDS: PPA42757
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| PPA42757 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (41) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2854-0.11 | ||
| DB_remark | PPA-SEC-10 protein; contains similarity to Pfam domains PF07393 (Exocyst complex component Sec10-like, alpha-helical bundle), PF13877 (Potential Monad-binding region of RPAP3); contains similarity to Interpro domains IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR025986 (RNA-polymerase II-associated protein 3-like, C-terminal domain), IPR009976 (Exocyst complex component Sec10-like), IPR033960 () | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00281126 | ||||
| Corresponding_transcript | PPA42757.1 | |||||
| Corresponding_protein | PP51742 | |||||
| Corresponding_oligo_set | GPL14372_Probes_52135 | |||||
| GPL14372_Probes_52137 | ||||||
| GPL14372_Probes_52138 | ||||||
| GPL14372_Probes_52139 | ||||||
| GPL14372_Probes_52140 | ||||||
| Matching_cDNA | FG105821 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_52135 | |||||
| GPL14372_Probes_52137 | ||||||
| GPL14372_Probes_52138 | ||||||
| GPL14372_Probes_52139 | ||||||
| GPL14372_Probes_52140 | ||||||
| RNASeq_FPKM | WBls:0000032 | 16.5186 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.95072 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
