WormBase Tree Display for CDS: PPA43221
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PPA43221 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 59 | |||
106 | 178 | |||||
223 | 388 | |||||
555 | 697 | |||||
867 | 983 | |||||
1020 | 1140 | |||||
1241 | 1320 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2864-20.35 | ||
DB_remark | contains similarity to Pfam domain PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00281590 | ||||
Corresponding_transcript | PPA43221.1 | |||||
Corresponding_protein | PP59669 | |||||
Corresponding_oligo_set | GPL14372_Probes_80479 | |||||
GPL14372_Probes_80480 | ||||||
Microarray_results | GPL14372_Probes_80479 | |||||
GPL14372_Probes_80480 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 13.7138 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |