WormBase Tree Display for CDS: PPA43642
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| PPA43642 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (25) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S7-43.104 | ||
| DB_remark | PPA-HAF-3 protein; contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region); contains similarity to Interpro domains IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR039421 (Type 1 protein exporter), IPR003439 (ABC transporter-like, ATP-binding domain), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR003593 (AAA+ ATPase domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00282011 | ||||
| Corresponding_transcript | PPA43642.1 | |||||
| Corresponding_protein | PP75576 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Oct 2019 13:20:39 | WBPerson4055 | ||||
| Remark | [190704 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
| From_analysis | RNASeq | |||||
| [191008 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
