WormBase Tree Display for CDS: PPA43652
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| PPA43652 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (48) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S7-48.41 | ||
| DB_remark | contains similarity to Pfam domains PF00675 (Insulinase (Peptidase family M16)), PF01154 (Hydroxymethylglutaryl-coenzyme A synthase N terminal), PF05193 (Peptidase M16 inactive domain), PF08540 (Hydroxymethylglutaryl-coenzyme A synthase C terminal), PF16187 (Middle or third domain of peptidase_M16); contains similarity to Interpro domains IPR032632 (Peptidase M16, middle/third domain), IPR007863 (Peptidase M16, C-terminal), IPR013746 (Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain), IPR013528 (Hydroxymethylglutaryl-coenzyme A synthase, N-terminal), IPR011765 (Peptidase M16, N-terminal), IPR010122 (Hydroxymethylglutaryl-CoA synthase, eukaryotic), IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like), IPR016039 (Thiolase-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00282021 | ||||
| Corresponding_transcript | PPA43652.1 | |||||
| Corresponding_protein | PP61787 | |||||
| Corresponding_oligo_set (17) | ||||||
| Microarray_results (17) | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.68541 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 12.1217 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
