WormBase Tree Display for CDS: PPA43805
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PPA43805 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (25) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S10-20.15 | ||
DB_remark | PPA-HALY-1 protein; contains similarity to Pfam domain PF00221 (Aromatic amino acid lyase); contains similarity to Interpro domains IPR005921 (Histidine ammonia-lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal), IPR001106 (Aromatic amino acid lyase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00282174 | ||||
Corresponding_transcript | PPA43805.1 | |||||
Corresponding_protein | PP66332 | |||||
Corresponding_oligo_set | GPL14372_Probes_1915 | |||||
GPL14372_Probes_38599 | ||||||
Microarray_results | GPL14372_Probes_1915 | |||||
GPL14372_Probes_38599 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.08612 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |