WormBase Tree Display for CDS: PPA43847
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PPA43847 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S10-37.5 | ||
DB_remark | contains similarity to Pfam domain PF00085 (Thioredoxin); contains similarity to Interpro domains IPR013766 (Thioredoxin domain), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00282216 | ||||
Corresponding_transcript | PPA43847.1 | |||||
Corresponding_protein | PP72501 | |||||
Corresponding_oligo_set | GPL14372_Probes_68935 | |||||
GPL14372_Probes_68936 | ||||||
GPL14372_Probes_68969 | ||||||
Matching_cDNA | FE931902 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_68935 | |||||
GPL14372_Probes_68936 | ||||||
GPL14372_Probes_68969 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.3824 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |