WormBase Tree Display for CDS: PPA44409a
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PPA44409a | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
Inferred_automatically | make_isoforms.pl | |||||
SMap | S_parent | Sequence | PPA_ChrI | |||
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S57-28.15 | ||
DB_remark | contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Isoform | Curator_confirmed | WBPerson4055 | ||||
Visible | Gene | WBGene00282778 | ||||
Corresponding_transcript | PPA44409a.1 | |||||
Corresponding_protein | PP68552 | |||||
Corresponding_oligo_set | GPL14372_Probes_55201 | |||||
GPL14372_Probes_55202 | ||||||
Microarray_results | GPL14372_Probes_55201 | |||||
GPL14372_Probes_55202 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 04 Jul 2019 11:27:48 | WBPerson4055 | ||||
Method | curated |