WormBase Tree Display for CDS: PPA44734
expand all nodes | collapse all nodes | view schema
| PPA44734 | SMap | S_parent | Sequence | PPA_ChrIII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (19) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S112-20.65 | ||
| DB_remark | contains similarity to Pfam domains PF01472 (PUA domain), PF01509 (TruB family pseudouridylate synthase (N terminal domain)), PF02089 (Palmitoyl protein thioesterase), PF08068 (DKCLD (NUC011) domain), PF16198 (tRNA pseudouridylate synthase B C-terminal domain); contains similarity to Interpro domains IPR002472 (Palmitoyl protein thioesterase), IPR004521 (Uncharacterised domain CHP00451), IPR015947 (PUA-like superfamily), IPR029058 (Alpha/Beta hydrolase fold), IPR002478 (PUA domain), IPR032819 (tRNA pseudouridylate synthase B, C-terminal), IPR004802 (tRNA pseudouridine synthase B family), IPR002501 (Pseudouridine synthase II, N-terminal), IPR012960 (Dyskerin-like), IPR020103 (Pseudouridine synthase, catalytic domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00283103 | ||||
| Corresponding_transcript | PPA44734.1 | |||||
| Corresponding_protein | PP70030 | |||||
| Corresponding_oligo_set | GPL14372_Probes_40235 | |||||
| GPL14372_Probes_40236 | ||||||
| GPL14372_Probes_40237 | ||||||
| GPL14372_Probes_40238 | ||||||
| GPL14372_Probes_40239 | ||||||
| GPL14372_Probes_40240 | ||||||
| GPL14372_Probes_40241 | ||||||
| GPL14372_Probes_40247 | ||||||
| GPL14372_Probes_40248 | ||||||
| GPL14372_Probes_40249 | ||||||
| Matching_cDNA | AA193896 | Inferred_automatically | transcript_builder.pl | |||
| AW097878 | Inferred_automatically | transcript_builder.pl | ||||
| FE941007 | Inferred_automatically | transcript_builder.pl | ||||
| FE938818 | Inferred_automatically | transcript_builder.pl | ||||
| FE933297 | Inferred_automatically | transcript_builder.pl | ||||
| DV018815 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_40235 | |||||
| GPL14372_Probes_40236 | ||||||
| GPL14372_Probes_40237 | ||||||
| GPL14372_Probes_40238 | ||||||
| GPL14372_Probes_40239 | ||||||
| GPL14372_Probes_40240 | ||||||
| GPL14372_Probes_40241 | ||||||
| GPL14372_Probes_40247 | ||||||
| GPL14372_Probes_40248 | ||||||
| GPL14372_Probes_40249 | ||||||
| RNASeq_FPKM | WBls:0000032 | 87.7435 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 71.5132 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
