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WormBase Tree Display for CDS: PPA45088

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Name Class

PPA45088SMapS_parentSequencePPA_ChrII
StructureSource_exons1123
434511
5921242
DB_infoDatabasepristionchus.orgcdsgene-UMS-S273-6.73
DB_remarkcontains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00283457
Corresponding_transcriptPPA45088.1
Corresponding_proteinPP23356
Matching_cDNAAW114640Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:00000329.94651From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated