WormBase Tree Display for CDS: PPA45464
expand all nodes | collapse all nodes | view schema
| PPA45464 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (38) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S495-0.29 | ||
| DB_remark | contains similarity to Pfam domains PF00176 (SNF2-related domain), PF00271 (Helicase conserved C-terminal domain), PF00385 (Chromo (CHRromatin Organisation MOdifier) domain), PF00628 (PHD-finger), PF06461 (CHD subfamily II, SANT-like domain), PF06465 (CHD subfamily II, DUF1087), PF08073 (CHDNT (NUC034) domain), PF08074 (CHDCT2 (NUC038) domain); contains similarity to Interpro domains IPR023780 (Chromo domain), IPR016197 (Chromo-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR011011 (Zinc finger, FYVE/PHD-type), IPR001650 (Helicase, C-terminal domain-like), IPR019787 (Zinc finger, PHD-finger), IPR009463 (Domain of unknown function DUF1087), IPR038718 (SNF2-like, N-terminal domain superfamily), IPR001965 (Zinc finger, PHD-type), IPR000953 (Chromo/chromo shadow domain), IPR000330 (SNF2, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR009462 (CHD subfamily II, SANT-like domain), IPR012958 (CHD, N-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR012957 (CHD, C-terminal 2) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00283833 | ||||
| Corresponding_transcript | PPA45464.1 | |||||
| Corresponding_protein | PP67512 | |||||
| Corresponding_oligo_set (11) | ||||||
| Matching_cDNA | FE936575 | Inferred_automatically | transcript_builder.pl | |||
| AW052277 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (11) | ||||||
| RNASeq_FPKM | WBls:0000032 | 157.382 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 68.9347 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
