WormBase Tree Display for CDS: PPA45812
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PPA45812 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 125 | |||
174 | 293 | |||||
336 | 414 | |||||
512 | 610 | |||||
660 | 800 | |||||
850 | 939 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S2840-103.23 | ||
DB_remark | contains similarity to Pfam domains PF00408 (Phosphoglucomutase/phosphomannomutase, C-terminal domain), PF02880 (Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III); contains similarity to Interpro domains IPR005843 (Alpha-D-phosphohexomutase, C-terminal), IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III), IPR036900 (Alpha-D-phosphohexomutase, C-terminal domain superfamily), IPR005846 (Alpha-D-phosphohexomutase, alpha/beta/alpha domain III) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00284181 | ||||
Corresponding_transcript | PPA45812.1 | |||||
Corresponding_protein | PP72724 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.22628 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |