WormBase Tree Display for CDS: PPA46480
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| PPA46480 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 78 | |||
| 480 | 606 | |||||
| 658 | 751 | |||||
| 809 | 887 | |||||
| 1189 | 1309 | |||||
| 1362 | 1401 | |||||
| 1669 | 1772 | |||||
| 1843 | 1901 | |||||
| 2134 | 2259 | |||||
| DB_info | DB_remark | PPA-DPH-5.2 protein; contains similarity to Pfam domain PF00590 (Tetrapyrrole (Corrin/Porphyrin) Methylases); contains similarity to Interpro domains IPR014777 (Tetrapyrrole methylase, subdomain 1), IPR014776 (Tetrapyrrole methylase, subdomain 2), IPR035996 (Tetrapyrrole methylase superfamily), IPR004551 (Diphthine synthase), IPR000878 (Tetrapyrrole methylase) | ||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00304259 | ||||
| Corresponding_transcript | PPA46480.1 | |||||
| Corresponding_protein | PP16058 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64299 | |||||
| GPL14372_Probes_64300 | ||||||
| GPL14372_Probes_64301 | ||||||
| GPL14372_Probes_64302 | ||||||
| Matching_cDNA | FG105808 | Inferred_automatically | transcript_builder.pl | |||
| FG102038 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_64299 | |||||
| GPL14372_Probes_64300 | ||||||
| GPL14372_Probes_64301 | ||||||
| GPL14372_Probes_64302 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
| Method | curated |
