WormBase Tree Display for CDS: PPA46508
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PPA46508 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 63 | |||
527 | 650 | |||||
797 | 870 | |||||
1298 | 1398 | |||||
1926 | 2007 | |||||
2231 | 2292 | |||||
2675 | 2738 | |||||
2986 | 3087 | |||||
3376 | 3441 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF02214 (BTB/POZ domain); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR003131 (Potassium channel tetramerisation-type BTB domain) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304287 | ||||
Corresponding_transcript | PPA46508.1 | |||||
Corresponding_protein | PP74919 | |||||
Matching_cDNA | EB183198 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000032 | 10.9963 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 38.9694 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |