WormBase Tree Display for CDS: PPA46534
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PPA46534 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 3 | 95 | |||
303 | 440 | |||||
692 | 781 | |||||
1025 | 1086 | |||||
1341 | 1446 | |||||
1680 | 1748 | |||||
DB_info | DB_remark | PPA-SPCS-2 protein; contains similarity to Pfam domain PF06703 (Microsomal signal peptidase 25 kDa subunit (SPC25)); contains similarity to Interpro domain IPR009582 (Signal peptidase complex subunit 2) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304313 | ||||
Corresponding_transcript | PPA46534.1 | |||||
Corresponding_protein | PP74449 | |||||
Corresponding_oligo_set | GPL14372_Probes_60254 | |||||
Matching_cDNA | FG100480 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_60254 | |||||
RNASeq_FPKM | WBls:0000032 | 104.097 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 61.4881 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |