WormBase Tree Display for CDS: PPA46545
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| PPA46545 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 2 | 181 | |||
| 287 | 397 | |||||
| 712 | 809 | |||||
| 862 | 957 | |||||
| 1006 | 1093 | |||||
| DB_info | DB_remark | contains similarity to Pfam domain PF07347 (NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)); contains similarity to Interpro domain IPR009947 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7) | ||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00304324 | ||||
| Corresponding_transcript | PPA46545.1 | |||||
| Corresponding_protein | PP74380 | |||||
| Corresponding_oligo_set | GPL14372_Probes_84076 | |||||
| GPL14372_Probes_84077 | ||||||
| GPL14372_Probes_84078 | ||||||
| GPL14372_Probes_84079 | ||||||
| GPL14372_Probes_84080 | ||||||
| Matching_cDNA | FE933471 | Inferred_automatically | transcript_builder.pl | |||
| FG100768 | Inferred_automatically | transcript_builder.pl | ||||
| FG097963 | Inferred_automatically | transcript_builder.pl | ||||
| FE933053 | Inferred_automatically | transcript_builder.pl | ||||
| FG098759 | Inferred_automatically | transcript_builder.pl | ||||
| FG101385 | Inferred_automatically | transcript_builder.pl | ||||
| FG095014 | Inferred_automatically | transcript_builder.pl | ||||
| DV018768 | Inferred_automatically | transcript_builder.pl | ||||
| FG096028 | Inferred_automatically | transcript_builder.pl | ||||
| FG101197 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_84076 | |||||
| GPL14372_Probes_84077 | ||||||
| GPL14372_Probes_84078 | ||||||
| GPL14372_Probes_84079 | ||||||
| GPL14372_Probes_84080 | ||||||
| RNASeq_FPKM | WBls:0000032 | 49.9716 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 50.6032 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
| Method | curated |
