WormBase Tree Display for CDS: PPA46566
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| PPA46566 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (20) | |||||
| DB_info | DB_remark | PPA-CKU-80 protein; contains similarity to Pfam domains PF02735 (Ku70/Ku80 beta-barrel domain), PF03731 (Ku70/Ku80 N-terminal alpha/beta domain); contains similarity to Interpro domains IPR005161 (Ku70/Ku80, N-terminal alpha/beta), IPR036465 (von Willebrand factor A-like domain superfamily), IPR016194 (SPOC-like, C-terminal domain superfamily), IPR006164 (Ku70/Ku80 beta-barrel domain) | ||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00304345 | ||||
| Corresponding_transcript | PPA46566.1 | |||||
| Corresponding_protein | PP75433 | |||||
| Matching_cDNA | FE940147 | Inferred_automatically | transcript_builder.pl | |||
| FG105654 | Inferred_automatically | transcript_builder.pl | ||||
| FG097300 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000032 | 20.1919 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 63.5905 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 17 Sep 2019 16:17:04 | WBPerson4055 | ||||
| Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
| [190917 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
