WormBase Tree Display for CDS: PPA46576
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PPA46576 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 2 | 166 | |||
211 | 315 | |||||
360 | 426 | |||||
502 | 584 | |||||
683 | 919 | |||||
DB_info | DB_remark | PPA-VPS-37 protein; contains similarity to Pfam domain PF07200 (Modifier of rudimentary (Mod(r)) protein); contains similarity to Interpro domains IPR037859 (), IPR009851 (Modifier of rudimentary, Modr) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304355 | ||||
Corresponding_transcript | PPA46576.1 | |||||
Corresponding_protein | PP74886 | |||||
Corresponding_oligo_set | GPL14372_Probes_62841 | |||||
GPL14372_Probes_62842 | ||||||
GPL14372_Probes_62843 | ||||||
GPL14372_Probes_62844 | ||||||
Matching_cDNA | FG094969 | Inferred_automatically | transcript_builder.pl | |||
FG095999 | Inferred_automatically | transcript_builder.pl | ||||
FG099747 | Inferred_automatically | transcript_builder.pl | ||||
AW097092 | Inferred_automatically | transcript_builder.pl | ||||
FG097616 | Inferred_automatically | transcript_builder.pl | ||||
AW114710 | Inferred_automatically | transcript_builder.pl | ||||
FG095244 | Inferred_automatically | transcript_builder.pl | ||||
AW052618 | Inferred_automatically | transcript_builder.pl | ||||
FG097064 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_62841 | |||||
GPL14372_Probes_62842 | ||||||
GPL14372_Probes_62843 | ||||||
GPL14372_Probes_62844 | ||||||
RNASeq_FPKM | WBls:0000032 | 41.7571 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 70.4694 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |