WormBase Tree Display for CDS: PPA46592
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PPA46592 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 2 | 95 | |||
143 | 266 | |||||
330 | 437 | |||||
504 | 629 | |||||
675 | 834 | |||||
DB_info | DB_remark | PPA-MRPL-41 protein; contains similarity to Pfam domain PF09809 (Mitochondrial ribosomal protein L27); contains similarity to Interpro domain IPR019189 (Large ribosomal subunit protein mL41) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304371 | ||||
Corresponding_transcript | PPA46592.1 | |||||
Corresponding_protein | PP74553 | |||||
Corresponding_oligo_set | GPL14372_Probes_83802 | |||||
GPL14372_Probes_83803 | ||||||
Matching_cDNA | FG104533 | Inferred_automatically | transcript_builder.pl | |||
FG106553 | Inferred_automatically | transcript_builder.pl | ||||
FG102090 | Inferred_automatically | transcript_builder.pl | ||||
FG104211 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_83802 | |||||
GPL14372_Probes_83803 | ||||||
RNASeq_FPKM | WBls:0000032 | 196.368 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 131.457 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |