WormBase Tree Display for CDS: PPA46616
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PPA46616 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 3 | 59 | |||
541 | 628 | |||||
1660 | 1733 | |||||
1776 | 1922 | |||||
DB_info | DB_remark | PPA-EMC-6 protein; contains similarity to Pfam domain PF07019 (EMC6); contains similarity to Interpro domains IPR008504 (ER membrane protein complex subunit 6), IPR029008 (ER membrane protein complex subunit 6-like) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304395 | ||||
Corresponding_transcript | PPA46616.1 | |||||
Corresponding_protein | PP74643 | |||||
Corresponding_oligo_set | GPL14372_Probes_77538 | |||||
Matching_cDNA | FG099252 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_77538 | |||||
RNASeq_FPKM | WBls:0000032 | 253.204 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 221.956 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |