WormBase Tree Display for CDS: PPA46624
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PPA46624 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 17 | 195 | |||
307 | 403 | |||||
632 | 829 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00276 (Ribosomal protein L23), PF03939 (Ribosomal protein L23, N-terminal domain); contains similarity to Interpro domains IPR005633 (Large ribosomal subunit protein uL23, N-terminal), IPR013025 (Large ribosomal subunit protein uL23-like), IPR019985 (Large ribosomal subunit protein uL23), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR012678 (Ribosomal protein uL23/eL15/eS24 core domain superfamily) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00304403 | ||||
Corresponding_transcript | PPA46624.1 | |||||
Corresponding_protein | PP04054 | |||||
Corresponding_oligo_set | GPL14372_Probes_78716 | |||||
Matching_cDNA (224) | ||||||
Microarray_results | GPL14372_Probes_78716 | |||||
RNASeq_FPKM | WBls:0000032 | 218.346 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 46.9098 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |