WormBase Tree Display for CDS: PPA46625
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PPA46625 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 146 | 238 | |||
480 | 612 | |||||
741 | 827 | |||||
1032 | 1171 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF16954 (Haem-transporter, endosomal/lysosomal, haem-responsive gene); contains similarity to Interpro domain IPR026218 (Heme transporter HRG) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00304404 | ||||
Corresponding_transcript | PPA46625.1 | |||||
Corresponding_protein | PP74703 | |||||
Corresponding_oligo_set | GPL14372_Probes_78729 | |||||
GPL14372_Probes_78730 | ||||||
GPL14372_Probes_78731 | ||||||
Matching_cDNA | EB184091 | Inferred_automatically | transcript_builder.pl | |||
EB182486 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_78729 | |||||
GPL14372_Probes_78730 | ||||||
GPL14372_Probes_78731 | ||||||
RNASeq_FPKM | WBls:0000032 | 67.2127 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 109.192 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |