WormBase Tree Display for CDS: PPA46638
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PPA46638 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 486 | 611 | |||
657 | 749 | |||||
805 | 891 | |||||
989 | 1108 | |||||
1157 | 1417 | |||||
DB_info | DB_remark | PPA-SAM-4 protein; contains similarity to Pfam domain PF10158 (Tumour suppressor protein); contains similarity to Interpro domain IPR018780 (BLOC-1-related complex subunit 5) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00304417 | ||||
Corresponding_transcript | PPA46638.1 | |||||
Corresponding_protein | PP06889 | |||||
Corresponding_oligo_set | GPL14372_Probes_64101 | |||||
GPL14372_Probes_64104 | ||||||
Matching_cDNA | FE933353 | Inferred_automatically | transcript_builder.pl | |||
AI988736 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_64101 | |||||
GPL14372_Probes_64104 | ||||||
RNASeq_FPKM | WBls:0000032 | 80.0066 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 86.6414 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |