WormBase Tree Display for CDS: PPA46646

PPA46646 Evidence: Curator_confirmed: WBPerson4055
  SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons: 1 39
      88 194
      312 432
      478 568
      644 757
      803 876
      989 1069
      1115 1263
      1309 1387
      1461 1532
  DB_info: DB_remark: PPA-SMG-4 protein; contains similarity to Pfam domain PF03467 (Smg-4/UPF3 family); contains similarity to Interpro domains IPR039722 (Nonsense-mediated mRNA decay protein 3), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR005120 (UPF3 domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00304425
    Corresponding_transcript: PPA46646.1
    Corresponding_protein: PP30089
    Matching_cDNA: FG104901 Inferred_automatically: transcript_builder.pl
      FG103774 Inferred_automatically: transcript_builder.pl
      FG102873 Inferred_automatically: transcript_builder.pl
      FG099803 Inferred_automatically: transcript_builder.pl
      FG103891 Inferred_automatically: transcript_builder.pl
      FG105268 Inferred_automatically: transcript_builder.pl
    RNASeq_FPKM: WBls:0000032 53.5004 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 78.9937 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Last_reviewed: 17 Sep 2019 16:11:23 WBPerson4055
    Remark: [190221 mh6] imported from pristionchus.org Curator_confirmed: WBPerson18244
      [190917 mh6] This CDS has been updated based on the RNAseq data. Curator_confirmed: WBPerson4055
        From_analysis: RNASeq
  Method: curated