WormBase Tree Display for CDS: PPA46683
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PPA46683 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 3 | 110 | |||
188 | 281 | |||||
344 | 402 | |||||
908 | 996 | |||||
1216 | 1370 | |||||
1666 | 1748 | |||||
2071 | 2208 | |||||
DB_info | DB_remark | PPA-MRPS-18B protein; contains similarity to Interpro domains IPR036870 (Small ribosomal subunit protein bS18 superfamily), IPR040054 (Small ribosomal subunit protein mS40) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00304462 | ||||
Corresponding_transcript | PPA46683.1 | |||||
Corresponding_protein | PP74666 | |||||
Corresponding_oligo_set | GPL14372_Probes_54476 | |||||
GPL14372_Probes_54477 | ||||||
GPL14372_Probes_54479 | ||||||
Matching_cDNA | FG096627 | Inferred_automatically | transcript_builder.pl | |||
AI986484 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_54476 | |||||
GPL14372_Probes_54477 | ||||||
GPL14372_Probes_54479 | ||||||
RNASeq_FPKM | WBls:0000032 | 55.534 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 58.315 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |